PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN02315.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB
Protein Properties Length: 330aa    MW: 36624.8 Da    PI: 8.1372
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN02315.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.27.6e-181462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W++eEd +l+d+++q+G+g +W + ++++g++R++k+c++rw++yl
       KHN02315.1 14 KGPWSPEEDAKLKDYIEQHGTGgNWIALPQKVGLKRCGKSCRLRWLNYL 62
                     79*********************************************97 PP

2Myb_DNA-binding37.55.5e-1269111246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g +++ Ed+++  +++  G++ W+ Ia  ++ gRt++++k++w++
       KHN02315.1  69 GQFSEAEDKIICSLFASIGSR-WSIIATQLP-GRTDNDIKNYWNT 111
                      789******************.*********.***********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129421.493966IPR017930Myb domain
SuperFamilySSF466897.52E-2711109IPR009057Homeodomain-like
SMARTSM007171.6E-131364IPR001005SANT/Myb domain
PfamPF002492.3E-161462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-241569IPR009057Homeodomain-like
CDDcd001671.49E-101662No hitNo description
PROSITE profilePS5129416.65167117IPR017930Myb domain
SMARTSM007172.6E-1067115IPR001005SANT/Myb domain
PfamPF002495.8E-1169111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.3E-2370117IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MGRAPCCDKA NVKKGPWSPE EDAKLKDYIE QHGTGGNWIA LPQKVGLKRC GKSCRLRWLN  60
YLRPNIKHGQ FSEAEDKIIC SLFASIGSRW SIIATQLPGR TDNDIKNYWN TKLKKKMMAM  120
NPSLQRKPQQ ITLLSILQSS AYSSPSSFRD SNNISYYHPH GSFSYSSNLL SGNNTSASAN  180
SFFQAQESFI DPTQKCQFKD SSNNSMFLFG GEATATATSC SSSDGSCNNQ ISHVIEPEFG  240
DASFVGGANN NIHPYSGVLE DNNTQKLMMF SNAGGSGSVS GWTDKQNGLL WEQNPLDYGL  300
DEIKQLISTN NSCNNFLFDD KKTQERVTYF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-24141177108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ9028640.0DQ902864.1 Glycine max transcription factor MYBJ7 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006604580.10.0PREDICTED: transcription factor RAX2
TrEMBLA0A0B2NZ440.0A0A0B2NZ44_GLYSO; Transcription factor RAX3
STRINGGLYMA19G36830.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13034340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.14e-78myb domain protein 36
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]